2019

• Henrikssson. J, Chen X, [...] Teichmann SA et al. (2019) Genome-wide CRISPR Screens in T Helper Cells Reveal Pervasive Crosstalk between Activation and Differentiation. Cell
• Büttner M, Miao Z, Wolf FA, Teichmann SA and Theis FJ (2019) A test metric for assessing single-cell RNA-seq batch correction. Nature Methods 16;1;43-49

2018

• Chen X, Miragaia RJ, Natarajan KN and Teichmann SA (2018) A rapid and robust method for single cell chromatin accessibility profiling. Nature communications 9;1;5345
• Jia G, Preussner J, Chen X, Guenther S, Yuan X et al. (2018) Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement. Nature communications 9;1;4877
• Vento-Tormo R, Efremova M, [...] Teichmann SA et al. (2018) Single-cell reconstruction of the early maternal-fetal interface in humans. Nature 563;7731;347-353
• Hagai T, Chen X, Miragaia RJ, Rostom R, Gomes T. [...] Teichmann SA et al. (2018) Gene expression variability across cells and species shapes innate immunity. Nature 563;7730;197-202
• Pramanik J, Chen X, Kar G, Henriksson J, Gomes T [...] Teichmann SA et al. (2018) Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation. Genome medicine 10;1;76
• Young MD, Mitchell TJ, Vieira Braga FA, Tran MGB, Stewart BJ et al. (2018) Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors. Science 361;6402;594-599
• Lindeman I, Emerton G, Mamanova L, Snir O, Polanski K et al. (2018) BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq. Nature methods 15;8;563-565
• Severo MS, Landry JJM, Lindquist RL, Goosmann C, Brinkmann V et al. (2018) Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging. PNAS 115 (32) E7568-E7577
• Halim TYF, Rana BMJ, Walker JA, Kerscher B, Knolle MD et al. (2018) Tissue-Restricted Adaptive Type 2 Immunity Is Orchestrated by Expression of the Costimulatory Molecule OX40L on Group 2 Innate Lymphoid Cells. Immunity 48;6;1195-1207.e6
• Marsh JA and Teichmann SA. (2018) Editorial overview: Sequences and topology: Dynamic sequences and topologies of proteins. Current opinion in structural biology 50;vii-viii
• Svensson V, Vento-Tormo R and Teichmann SA. (2018) Exponential scaling of single-cell RNA-seq in the past decade. Nature protocols 13;4;599-604
• Svensson V, Teichmann SA and Stegle O. (2018) SpatialDE: identification of spatially variable genes. Nature methods 15, pages 343–346
• Natan E, Endoh T, Haim-Vilmovsky L, Flock T, Chalancon G et al. (2018) Cotranslational protein assembly imposes evolutionary constraints on homomeric proteins. Nature structural & molecular biology 25, pages 279–288
• Behjati S, Lindsay S, Teichmann SA and Haniffa M. (2018) Mapping human development at single-cell resolution. Development 145;3
• Massaia A, Chaves P, Samari S, Miragaia RJ, Meyer K et al. (2018) Single Cell Gene Expression to Understand the Dynamic Architecture of the Heart. Frontiers in cardiovascular medicine 5;167

2017

• Orit Rozenblatt-Rosen, Michael J. T. Stubbington, Aviv Regev, Sarah A. Teichmann. (2017) The Human Cell Atlas: from vision to reality. Nature
• Hegazy AN, West NR, Stubbington MJT, Wendt E, Suijker KIM et al. (2017) Circulating and Tissue-Resident CD4+ T Cells With Reactivity to Intestinal Microbiota Are Abundant in Healthy Individuals and Function Is Altered During Inflammation. Gastroenterology 153;5;1320-1337.e16
• Yang J, Ryan DJ, Wang W, Tsang JC, Lan G et al. (2017) Establishment of mouse expanded potential stem cells. Nature 550;7676;393-397
• Natarajan KN, Teichmann SA, Kolodziejczyk AA. (2017) Single cell transcriptomics of pluripotent stem cells: reprogramming and differentiation. Curr Opin Genet Dev. 46;66-76
• Stubbington MJT, Rozenblatt-Rosen O, Regev A, Teichmann SA. (2017) Single-cell transcriptomics to explore the immune system in health and disease. Science Oct 6;358(6359):58-63
• Haque A, Engel J, Teichmann SA and Lönnberg T. (2017) A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications. Genome medicine 9;1;75
• Kar G, Kim JK, Kolodziejczyk AA, Natarajan KN, Torlai Triglia, Mifsud B, Elderkin S, Marioni JC, Pombo A, Teichmann SA. (2017) Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression. Nature Communications 8;1;36
• Rostom R, Svensson V, Teichmann SA, Kar G. (2017) Computational approaches for interpreting scRNA-seq data. FEBS Lett.
• Donati G, Rognoni E, Hiratsuka T, Liakath-Ali K, Hoste E et al. (2017) Wounding induces dedifferentiation of epidermal Gata6(+) cells and acquisition of stem cell properties. Nature cell biology 19, pages 603–613
• Martinez-Jimenez CP, Eling N, Chen HC, Vallejos CA, Kolodziejczyk AA et al. (2017) Aging increases cell-to-cell transcriptional variability upon immune stimulation. Science 355;6332;1433-1436
• Vieira Braga FA, Teichmann SA and Stubbington MJ. (2017) Are cells from a snowman realistic? Cryopreserved tissues as a source for single-cell RNA-sequencing experiments. Genome biology 18;1;54
• Lönnberg T, Svensson V, James KR. (2017) Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria. Science Immunology 2;9
• Svensson V, Natarajan KN, Ly LH, Miragaia RJ, Labalette C, Macaulay IC, Cvejic A, Teichmann SA. (2017) Power analysis of single-cell RNA-sequencing experiments. Nature Methods 14, pages 381–387
• Wu YL, Stubbington MJ, Daly M, Teichmann SA and Rada C. (2017) Intrinsic transcriptional heterogeneity in B cells controls early class switching to IgE. The Journal of experimental medicine 214;1;183-196

2016

• Natan E, Wells JN, Teichmann SA and Marsh JA. (2016) Regulation, evolution and consequences of cotranslational protein complex assembly. Current opinion in structural biology 42;90-97
• Chen X, Love JC, Navin NE, Pachter L, Stubbington MJ et al. (2016) Single-cell analysis at the threshold. Nature biotechnology 34;11;1111-1118
• Yu Y, Tsang JC, Wang C, Clare S, Wang J et al. (2016) Single-cell RNA-seq identifies a PD-1^hi ILC progenitor and defines its development pathway. Nature 539;7627;102-106
• Eckersley-Maslin MA, Svensson V, Krueger C, Stubbs TM, Giehr P et al. (2016) MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs. Cell reports 17;1;179-92
• Sousa FL, Parente DJ, Hessman JA, Chazelle A, Teichmann SA and Swint-Kruse L. (2016) Data on publications, structural analyses, and queries used to build and utilize the AlloRep database. Data in brief 8;948-57
• Vieira Braga FA, Teichmann SA, Chen X. (2016) Genetics and immunity in the era of single cell genomics. Human Molecular Genetics
• Proserpio V, Piccolo A, Haim-Vilmovsky L, Kar G, Lönnberg T, Svensson V, Pramanik J, Natarajan KN, Zhai W, Zhang X, Donati G, Kayikci M, Kotar J, McKenzie AN, Montandon R, James KR, Fernandez-Ruiz D, Heath WR, Haque A, Billker O, Woodhouse S, Cicuta P, Nicodemi M, Teichmann SA. (2016) Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation Genome Biology
• Proserpio, V. and Mahata, B. (2016), Single-cell technologies to study the immune system. Immunology, 147 133–140
• Stubbington MJT, Lönnberg T, Proserpio V, Clare S, Speak AO, Dougan G, Teichmann SA. (2016) T cell fate and clonality inference from single-cell transcriptomes. Nature Methods, 13 329-332
• Amit I, Baker D, Barker R, Berger B, Bertozzi C et al. (2016), Voices of biotech. Nature biotechnology 34;3;270-5
• Sousa, F.L., Parente, D.J., Shis, D.L., Hessman, J.A., Chazelle, A., Bennett, M.R., Teichmann, S.A., Swint-Kruse, L. (2016) AlloRep: A Repository of Sequence, Structural and Mutagenesis Data for the LacI/GalR Transcription Regulators. Journal of Molecular Biology, 428 (4) 671-678
• Ilicic, T., Kim, J.K., Kolodziejczyk, A.A., Bagger, F.O., McCarthy, D.J., Marioni, J.C., Teichmann, S.A. (2016) Classification of low quality cells from single-cell RNA-seq data. Genome Biology, 17 (1)
• Macaulay IC, Svensson V, Labalette C, Ferreira L, Hamey F et al. (2016) Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells. Cell reports 14;4;966-977

2015

• Valentina Properpio and Tapio Lonnberg. (2015) Single-cell technologies are revolutionizing the approach to rare cells. Immunology & Cell Biology, 94 225-229
• Ahnert, S.E., Marsh, J.A., Hernández, H., Robinson, C.V., Teichmann, S.A. (2015) Principles of assembly reveal a periodic table of protein complexes. Science, 350 (6266)
• Buettner, F., Natarajan, K.N., Casale, F.P., Proserpio, V., Scialdone, A. (2015) Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells. Nature Biotechnology, 33 (2) 155-160
• Stubbington, M.J.T., Mahata, B., Svensson, V., Deonarine, A., Nissen, J.K. (2015) An atlas of mouse CD4+ T cell transcriptomes. Biology Direct, 10 (1)
• Kolodziejczyk, A.A., Kim, J.K., Tsang, J.C.H., Ilicic, T., Henriksson, J. (2015) Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation. Cell Stem Cell, 17 (4) 471-485
• Xie, X., Stubbington, M.J.T., Nissen, J.K., Andersen, K.G., Hebenstreit, D. (2015) The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding. PLoS Genetics, 11 (6)
• Marsh, J.A., Rees, H.A., Ahnert, S.E., Teichmann, S.A. (2015) Structural and evolutionary versatility in protein complexes with uneven stoichiometry. Nature communications, 6 6394
• Kim, J.K., Kolodziejczyk, A.A., Illicic, T., Teichmann, S.A., Marioni, J.C. (2015) Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression. Nature Communications, 6

2014

• Mahata, B., Zhang, X., Kolodziejczyk, A.A., Proserpio, V., Haim-Vilmovsky, L. (2014) Single-cell RNA sequencing reveals T helper cells synthesizing steroids De Novo to contribute to immune homeostasis. Cell Reports, 7 (4) 1130-1142
• Perica, T., Kondo, Y., Tiwari, S.P., McLaughlin, S.H., Kemplen, K.R. (2014) Evolution of oligomeric state through allosteric pathways that mimic ligand binding. Science, 346 (6216)
• Marsh, J.A., Teichmann, S.A. (2014) Protein Flexibility Facilitates Quaternary Structure Assembly and Evolution. PLoS Biology, 12 (5)
• Marsh, J.A., Teichmann, S.A. (2014) Parallel dynamics and evolution: Protein conformational fluctuations and assembly reflect evolutionary changes in sequence and structure. BioEssays, 36 (2) 209-218

2013

• Marsh, J.A., Hernández, H., Hall, Z., Ahnert, S.E., Perica, T. (2013) Protein complexes are under evolutionary selection to assemble via ordered pathways. Cell, 153 (2) 461-470
• Nishi, H., Fong, J.H., Chang, C., Teichmann, S.A., Panchenko, A.R. (2013) Regulation of protein-protein binding by coupling between phosphorylation and intrinsic disorder: Analysis of human protein complexes. Molecular BioSystems, 9 (7) 1620-1626
• Levy, E.D., Teichmann, S. (2013) Structural, evolutionary, and assembly principles of protein oligomerization. Progress in Molecular Biology and Translational Science, 117 25-51
• Feig, C., Jones, J.O., Kraman, M., Wells, R.J.B., Deonarine, A. (2013) Targeting CXCL12 from FAP-expressing carcinoma-associated fibroblasts synergizes with anti-PD-L1 immunotherapy in pancreatic cancer. Proceedings of the National Academy of Sciences of the United States of America, 110 (50) 20212-20217
• Roberts, E.W., Deonarine, A., Jones, J.O., Denton, A.E., Feig, C. (2013) Depletion of stromal cells expressing fibroblast activation protein-α from skeletal muscle and bone marrow results in cachexia and anemia. Journal of Experimental Medicine, 210 (6) 1137-1151
• Hall, Z., Hernández, H., Marsh, J.A., Teichmann, S.A., Robinson, C.V. (2013) The role of salt bridges, charge density, and subunit flexibility in determining disassembly routes of protein complexes. Structure, 21 (8) 1325-1337
• Brennecke, P., Anders, S., Kim, J.K., Kołodziejczyk, A.A., Zhang, X. (2013) Accounting for technical noise in single-cell RNA-seq experiments. Nature Methods, 10 (11) 1093-1098

2012

• Schumann, D., Kiselev, D., Teichmann, S., Synal, H.-A., Kubik, P. (2012) Radiochemical analysis of concrete samples from accelerator waste. Radiochimica Acta, 100 (11) 851-856
• Charoensawan, V., Janga, S.C., Bulyk, M.L., Babu, M.M., Teichmann, S.A. (2012) DNA Sequence Preferences of Transcriptional Activators Correlate More Strongly than Repressors with Nucleosomes. Molecular Cell, 47 (2) 183-192
• Perica, T., Chothia, C., Teichmann, S.A. (2012) Evolution of oligomeric state through geometric coupling of protein interfaces. Proceedings of the National Academy of Sciences of the United States of America, 109 (21) 8127-8132
• Vaquerizas, J.M., Teichmann, S.A., Luscombe, N.M. (2012) How do you find transcription factors? Computational approaches to compile and annotate repertoires of regulators for any genome. Methods in Molecular Biology, 786 3-19
• Schlosser, M., Kruse, J., Gierl, C., Teichmann, S., Tichelmann, S. (2012) Fast transport, atom sample splitting and single-atom qubit supply in two-dimensional arrays of optical microtraps. New Journal of Physics, 14
• Levy, E.D., De, S., Teichmann, S.A. (2012) Cellular crowding imposes global constraints on the chemistry and evolution of proteomes. Proceedings of the National Academy of Sciences of the United States of America, 109 (50) 20461-20466
• Brookes, E., De Santiago, I., Hebenstreit, D., Morris, K.J., Carroll, T. (2012) Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs. Cell Stem Cell, 10 (2) 157-170

2011

• Hebenstreit, D., Gu, M., Haider, S., Turner, D.J., Lió, P. (2011) EpiChIP: Gene-by-gene quantification of epigenetic modification levels. Nucleic Acids Research, 39 (5)
• Hebenstreit, D., Teichmann, S.A. (2011) Analysis and simulation of gene expression profiles in pure and mixed cell populations. Physical Biology, 8 (3)
• Marsh, J.A., Teichmann, S.A. (2011) Relative solvent accessible surface area predicts protein conformational changes upon binding. Structure, 19 (6) 859-867
• Hebenstreit, D., Fang, M., Gu, M., Charoensawan, V., Van Oudenaarden, A. (2011) RNA sequencing reveals two major classes of gene expression levels in metazoan cells. Molecular Systems Biology, 7

2010

• Charoensawan, V., Adryan, B., Martin, S., Söllner, C., Thisse, B. (2010) The impact of gene expression regulation on evolution of extracellular signaling pathways. Molecular and Cellular Proteomics, 9 (12) 2666-2677
• Su, J., Teichmann, S.A., Down, T.A. (2010) Assessing computational methods of cis-regulatory module prediction. PLoS Computational Biology, 6 (12)
• Martin, S., Söllner, C., Charoensawan, V., Adryan, B., Thisse, B. (2010) Construction of a large extracellular protein interaction network and its resolution by spatiotemporal expression profiling. Molecular and Cellular Proteomics, 9 (12) 2654-2665
• Marsh, J.A., Teichmann, S.A. (2010) How do proteins gain new domains?. Genome Biology, 11 (7)
• Ravasi, T., Suzuki, H., Cannistraci, C.V., Katayama, S., Bajic, V.B. (2010) An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man. Cell, 140 (5) 744-752
• Adryan, B., Teichmann, S.A. (2010) The developmental expression dynamics of Drosophila melanogaster transcription factors. Genome Biology, 11 (4)
• Teichmann, S., Chen, B., Dilanian, R.A., Hannaford, P., Van Dao, L. (2010) Experimental aspects of multiharmonic-order coherent diffractive imaging. Journal of Applied Physics, 108 (2)

2009

• Chen, B., Dilanian, R.A., Teichmann, S., Abbey, B., Peele, A.G. (2009) Multiple wavelength diffractive imaging. Physical Review A - Atomic, Molecular, and Optical Physics, 79 (2)
• Teichmann, S., Hannaford, P., Van Dao, L. (2009) Phase-matched emission of few high-harmonic orders from a helium gas cell. Applied Physics Letters, 94 (17)
• Miranda-Saavedra, D., De, S., Trotter, M.W., Teichmann, S.A., Göttgens, B. (2009) BloodExpress: A database of gene expression in mouse haematopoiesis. Nucleic Acids Research, 37 (SUPPL. 1) D873-D879
• Kummerfeld, S.K., Teichmann, S.A. (2009) Protein domain organisation: Adding order. BMC Bioinformatics, 10
• De, S., Teichmann, S.A., Babu, M.M. (2009) The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome. Genome Research, 19 (5) 785-794
• Suzuki, H., Forrest, A.R.R., Van Nimwegen, E., Daub, C.O., Balwierz, P.J. (2009) The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics, 41 (5) 553-562
• Teichmann, S., Chen, B., Dilanian, R.A., Hannaford, P., Dao, L.V. (2009) Spectral characteristics across the spatial profile of a high-harmonic beam. Journal of Physics D: Applied Physics, 42 (13)
• Pfreundt, U., James, D.P., Tweedie, S., Wilson, D., Teichmann, S.A. (2009) FlyTF: Improved annotation and enhanced functionality of the Drosophila transcription factor database. Nucleic Acids Research, 38 (SUPPL.1) D443-D447
• Watkins, N.A., Gusnanto, A., De Bono, B., De, S., Miranda-Saavedra, D. (2009) A HaemAtlas: Characterizing gene expression in differentiated human blood cells. Blood, 113 (19) e1-e9
• Wilson, N.K., Miranda-Saavedra, D., Kinston, S., Bonadies, N., Foster, S.D. (2009) The transcriptional program controlled by the stem cell leukemia gene Scl /Tal1 during early embryonic hematopoietic development. Blood, 113 (22) 5456-5465
• Dilanian, R.A., Chen, B., Williams, G.J., Quiney, H.M., Nugent, K.A. (2009) Diffractive imaging using a polychromatic high-harmonic generation soft-x-ray source. Journal of Applied Physics, 106 (2)

2008

• Wilson, D., Charoensawan, V., Kummerfeld, S.K., Teichmann, S.A. (2008) DBD - Taxonomically broad transcription factor predictions: New content and functionality. Nucleic Acids Research, 36 (SUPPL. 1) D88-D92
• Loos, R.J.F., Lindgren, C.M., Li, S., Wheeler, E., Zhao, J.H. (2008) Common variants near MC4R are associated with fat mass, weight and risk of obesity. Nature Genetics, 40 (6) 768-775
• Van Dao, L., Teichmann, S., Hannaford, P. (2008) Phase-matching for generation of few high order harmonics in a semi-infinite gas cell. Physics Letters, Section A: General, Atomic and Solid State Physics, 372 (31) 5254-5257
• Lopez-Bigas, N., De, S., Teichmann, S.A. (2008) Functional protein divergence in the evolution of Homo sapiens. Genome Biology, 9 (2)
• Levy, E.D., Erba, E.B., Robinson, C.V., Teichmann, S.A. (2008) Assembly reflects evolution of protein complexes. Nature, 453 (7199) 1262-1265
• Dilanian, R.A., Chen, B., Teichmann, S., Dao, L.V., Quiney, H.M. (2008) High-harmonic-generation spectrum reconstruction from Young's double-slits interference pattern using the maximum entropy method. Optics Letters, 33 (20) 2341-2343
• Gsponer, J., Futschik, M.E., Teichmann, S.A., Babu, M.M. (2008) Tight regulation of unstructured proteins: From transcript synthesis to protein degradation. Science, 322 (5906) 1365-1368
• De, S., Lopez-Bigas, N., Teichmann, S.A. (2008) Patterns of evolutionary constraints on genes in humans. BMC Evolutionary Biology, 8 (1)
• Van Dao, L., Teichmann, S., Davis, J., Hannaford, P. (2008) Generation of high flux, highly coherent extreme ultraviolet radiation in a gas cell. Journal of Applied Physics, 104 (2)

2007

• Nir-El, Y., Haquin, G., Yungreiss, Z., Hass, M., Goldring, G. (2007) Precision measurement of the decay rate of Be7 in host materials. Physical Review C - Nuclear Physics, 75 (1)
• Adryan, B., Teichmann, S.A. (2007) Computational identification of site-specific transcription factors in Drosophila. Fly, 1 (3) 142-145
• Clark, A.G., Eisen, M.B., Smith, D.R., Bergman, C.M., Oliver, B. (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature, 450 (7167) 203-218
• Pereira-Leal, J.B., Levy, E.D., Kamp, C., Teichmann, S.A. (2007) Evolution of protein complexes by duplication of homomeric interactions. Genome Biology, 8 (4)
• Talavera, D., Vogel, C., Orozco, M., Teichmann, S.A., De La Cruz, X. (2007) The (In)dependence of alternative splicing and gene duplication. PLoS Computational Biology, 3 (3) 0375-0388

2006

• Nye, T.M.W., Berzuini, C., Gilks, W.R., Babu, M.M., Teichmann, S. (2006) Predicting the strongest domain-domain contact in interacting protein pairs. Statistical Applications in Genetics and Molecular Biology, 5 (1) i-17
• Pereira-Leal, J.B., Levy, E.D., Teichmann, S.A. (2006) The origins and evolution of functional modules: Lessons from protein complexes. Philosophical Transactions of the Royal Society B: Biological Sciences, 361 (1467) 507-517
• Han, J.-H., Kerrison, N., Chothia, C., Teichmann, S.A. (2006) Divergence of Interdomain Geometry in Two-Domain Proteins. Structure, 14 (5) 935-945
• Kummerfeld, S.K., Teichmann, S.A. (2006) DBD: a transcription factor prediction database.. Nucleic acids research., 34 (Database issue) D74-81
• Syassen, N., Volz, T., Teichmann, S., Dürr, S., Rempe, G. (2006) Collisional decay of Rb87 Feshbach molecules at 1005.8 G. Physical Review A - Atomic, Molecular, and Optical Physics, 74 (6)
• Nye, T.M., Berzuini, C., Gilks, W.R., Babu, M.M., Teichmann, S. (2006) Predicting the strongest domain-domain contact in interacting protein pairs.. Statistical applications in genetics and molecular biology [electronic resource]., 5 (1)
• Levy, E.D., Pereira-Leal, J.B., Chothia, C., Teichmann, S.A. (2006) 3D complex: A structural classification of protein complexes. PLoS Computational Biology, 2 (11) 1395-1406
• Madan Babu, M., Teichmann, S.A., Aravind, L. (2006) Evolutionary Dynamics of Prokaryotic Transcriptional Regulatory Networks. Journal of Molecular Biology, 358 (2) 614-633

2005

• Pereira-Leal, J.B., Teichmann, S.A. (2005) Novel specificities emerge by stepwise duplication of functional modules. Genome Research, 15 (4) 552-559
• Carninci, P., Kasukawa, T., Katayama, S., Gough, J., Frith, M.C. (2005) The transcriptional landscape of the mammalian genome.. Science, 309 (5740) 1559-1563
• Vogel, C., Teichmann, S.A., Pereira-Leal, J. (2005) The relationship between domain duplication and recombination. Journal of Molecular Biology, 346 (1) 355-365
• Wright, C.F., Teichmann, S.A., Clarke, J., Dobson, C.M. (2005) The importance of sequence diversity in the aggregation and evolution of proteins. Nature, 438 (7069) 878-881
• Nye, T.M.W., Berzuini, C., Gilks, W.R., Babu, M.M., Teichmann, S.A. (2005) Statistical analysis of domains in interacting protein pairs. Bioinformatics, 21 (7) 993-1001
• Kunin, V., Teichmann, S.A., Huynen, M.A., Ouzounis, C.A. (2005) The properties of protein family space depend on experimental design. Bioinformatics, 21 (11) 2618-2622

2004

• Luscombe, N.M., Babu, M.M., Yu, H., Snyder, M., Teichmann, S.A. (2004) Genomic analysis of regulatory network dynamics reveals large topological changes. Nature, 431 (7006) 308-312
• Teichmann, S.A., Babu, M.M. (2004) Gene regulatory network growth by duplication. Nature Genetics, 36 (5) 492-496

2003

• Apic, G., Huber, W., Teichmann, S.A. (2003) Multi-domain protein families and domain pairs: Comparison with known structures and a random model of domain recombination. Journal of Structural and Functional Genomics, 4 (2-3) 67-78
• Vogel, C., Teichmann, S.A., Chothia, C. (2003) The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity. Development, 130 (25) 6317-6328

2002

• Teichmann, S.A. (2002) The constraints protein-protein interactions place on sequence divergence. Journal of Molecular Biology, 324 (3) 399-407
• Teichmann, S.A., Babu, M.M. (2002) Conservation of gene co-regulation in prokaryotes and eukaryotes. Trends in Biotechnology, 20 (10) 407-410
• Rison, S.C.G., Teichmann, S.A., Thornton, J.M. (2002) Homology, pathway distance and chromosomal localization of the small molecule metabolism enzymes in Escherichia coli. Journal of Molecular Biology, 318 (3) 911-932
• Jardine, O., Gough, J., Chothia, C., Teichmann, S.A. (2002) Comparison of the small molecule metabolic enzymes of Escherichia coli and Saccharomyces cerevisiae. Genome Research, 12 (6) 916-929

2001

• Qian, J., Stenger, B., Wilson, C.A., Lin, J., Jansen, R. (2001) PartsList: A web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information. Nucleic Acids Research, 29 (8) 1750-1764
• Park, J., Lappe, M., Teichmann, S.A. (2001) Mapping protein family interactions: Intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. Journal of Molecular Biology, 307 (3) 929-938
• Apic, G., Gough, J., Teichmann, S.A. (2001) An insight into domain combinations. Bioinformatics, 17 (SUPPL. 1) S83-S89
• Teichmann, S.A., Rison, S.C.G., Thornton, J.M., Riley, M., Gough, J. (2001) The evolution and structural anatomy of the small molecule metabolic pathways in Escherichia coli. Journal of Molecular Biology, 311 (4) 693-708
• Apic, G., Gough, J., Teichmann, S.A. (2001) Domain combinations in archaeal, eubacterial and eukaryotic proteomes. Journal of Molecular Biology, 310 (2) 311-325

2000

• Teichmann, S.A., Chothia, C. (2000) Immunoglobulin superfamily proteins in Caenorhabditis elegans. Journal of Molecular Biology, 296 (5) 1367-1383
• Teichmann, S.A., Chothia, C., Church, G.M., Park, J. (2000) Fast assignment of protein structures to sequences using the Intermediate Sequence Library PDB-ISL. Bioinformatics, 16 (2) 117-124

1999

• Teichmann, Sarah, Park, Jong, Chothia, Cyrus (1999) Genome sequences and protein structures. Proceedings of the Annual International Conference on Computational Molecular Biology, RECOMB,
• Teichmann, S.A., Mitchison, G. (1999) Is there a phylogenetic signal in prokaryote proteins?. Journal of Molecular Evolution, 49 (1) 98-107

1998

• Teichmann, S.A., Parkt, J., Chothia, C. (1998) Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements. Proceedings of the National Academy of Sciences of the United States of America, 95 (25) 14658-14663
• Park, J., Teichmann, S.A. (1998) DIVCLUS: An automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins. Bioinformatics, 14 (2) 144-150
• Bateman, A., Murzin, A.G., Teichmann, S.A. (1998) Structure and distribution of pentapeptide repeats in bacteria. Protein Science, 7 (6) 1477-1480

1997

• Park, J., Teichmann, S.A., Hubbard, T., Chothia, C. (1997) Intermediate sequences increase the detection of homology between sequences. Journal of Molecular Biology, 273 (1) 349-354

1996

• Smith, B.O., Ito, Y., Raine, A., Teichmann, S., Ben-Tovim, L. (1996) An approach to global fold determination using limited NMR data from larger proteins selectively protonated at specific residue types. Journal of Biomolecular NMR, 8 (3) 360-368